Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| LGG | rs72627129 | chr14:74374805 | T/C | 1.9E-7 | 404 | 14.73 | 17.2 | 3.93 | KM Plot |
| LGG | rs72627130 | chr14:74374897 | C/T | 1.9E-7 | 404 | 14.73 | 17.2 | 3.93 | KM Plot |
| LGG | rs726289 | chr10:81706951 | C/T | 1.78E-5 | 407 | 15.3 | 16.37 | 9.38 | KM Plot |
| LGG | rs72704099 | chr1:161697072 | G/C | 1.22E-5 | 400 | 14.92 | 19.03 | 6.63 | KM Plot |
| LGG | rs72726931 | chr15:31859828 | A/G | 5.89E-5 | 406 | 15.17 | 15.33 | 13.28 | KM Plot |
| LGG | rs72727324 | chr9:33912715 | C/T | 1.64E-5 | 405 | 15.35 | 16.38 | 6.13 | KM Plot |
| LGG | rs72727384 | chr9:33980095 | T/C | 6.44E-6 | 404 | 15.37 | 16.38 | 6.13 | KM Plot |
| LGG | rs72727393 | chr9:33990271 | T/C | 6.44E-6 | 404 | 15.37 | 16.38 | 6.13 | KM Plot |
| LGG | rs72729327 | chr9:34022383 | T/A | 6.62E-6 | 403 | 15.55 | 16.38 | 6.13 | KM Plot |
| LGG | rs72731973 | chr9:83423376 | C/T | 3.22E-5 | 399 | 15.97 | 14.22 | 8.5 | KM Plot |
| LGG | rs72731980 | chr9:83448494 | T/C | 0.000204 | 398 | 16.33 | 14.22 | 7.87 | KM Plot |
| LGG | rs72731982 | chr9:83448694 | C/T | 0.000204 | 398 | 16.33 | 14.22 | 7.87 | KM Plot |
| LGG | rs7275572 | chr21:45578139 | T/C | 8.52E-5 | 401 | 4.98 | 15.57 | 15.5 | KM Plot |
| LGG | rs7275654 | chr21:45578184 | T/C | 8.52E-5 | 401 | 4.98 | 15.57 | 15.5 | KM Plot |
| LGG | rs72759762 | chr5:56308930 | T/G | 7.76E-5 | 395 | 15.57 | 14.6 | 15.15 | KM Plot |